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*How to Handle DNA Sequences
*How to Handle DNA Sequences
**Use [http://en.wikipedia.org/wiki/Sequence_alignment sequence alignment] to organize sequences across rows ([http://en.wikipedia.org/wiki/List_of_sequence_alignment_software software]) (not necessary for this project so far...)
**Use [http://en.wikipedia.org/wiki/Sequence_alignment sequence alignment] to organize sequences across rows ([http://en.wikipedia.org/wiki/List_of_sequence_alignment_software software])
**Letter standards for DNA and Amino Acids: http://www.dna.affrc.go.jp/misc/MPsrch/InfoIUPAC.html
 


*There are two proteins we have sequences for - HIV Protease and HIV Reverse transcriptase. A great video that describes how these work is available here:
*There are two proteins we have sequences for - HIV Protease and HIV Reverse transcriptase. A great video that describes how these work is available here:
**http://www.youtube.com/watch?v=RO8MP3wMvqg&feature=related
**http://www.youtube.com/watch?v=RO8MP3wMvqg&feature=related


*HIV Protease helps cut up HIV proteins in to their right shapes once the cell starts producing them:
*HIV Protease helps cut up HIV proteins in to their right shapes once the cell starts producing them:
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**PR Sequence Info: http://www.bioafrica.net/proteomics/POL-PRprot.html
**PR Sequence Info: http://www.bioafrica.net/proteomics/POL-PRprot.html
**PR Drug Resistance Info: http://hivdb.stanford.edu/cgi-bin/PositionPhenoSummary.cgi
**PR Drug Resistance Info: http://hivdb.stanford.edu/cgi-bin/PositionPhenoSummary.cgi


*Reverse Transcriptase takes the viral RNA and converts it into DNA to be integrated into the cell:
*Reverse Transcriptase takes the viral RNA and converts it into DNA to be integrated into the cell:
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