Machine Learning/HMM

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Hidden Markov Models

Papers/Tutorials

HMMs and Speech

Implementations

GHMM (C)
HMMER (compiled C-apps for Protein (possibly speech) analysis)
logilab-hmm (Python)
HMM Toolbox (MATLAB)
jahmm (Java)

R

HMM: very simple hidden markov models
hmm.discnp: good, allows multiple observations
msm: continuous time, with covariates

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