# Machine Learning/HMM

From Noisebridge

< Machine Learning(Difference between revisions)

(→Implementations) |
(→R) |
||

Line 13: | Line 13: | ||

==== R ==== | ==== R ==== | ||

* [http://cran.r-project.org/web/packages/HMM/index.html HMM]: very simple hidden markov models | * [http://cran.r-project.org/web/packages/HMM/index.html HMM]: very simple hidden markov models | ||

− | * [http://cran.r-project.org/web/packages/hmm.discnp/index.html hmm.discnp]: | + | * [http://cran.r-project.org/web/packages/hmm.discnp/index.html hmm.discnp]: allows observations of multiple runs |

− | * [http://cran.r-project.org/web/packages/msm/index.html msm]: continuous time, with covariates | + | * [http://cran.r-project.org/web/packages/msm/index.html msm]: continuous time, with covariates, multiple runs |

## Revision as of 20:59, 4 August 2010

## Contents |

## Hidden Markov Models

### Papers/Tutorials

### Implementations

- GHMM (C)
- HMMER (compiled C-apps for Protein (possibly speech) analysis)
- logilab-hmm (Python)
- HMM Toolbox (MATLAB)
- jahmm (Java)

#### R

- HMM: very simple hidden markov models
- hmm.discnp: allows observations of multiple runs
- msm: continuous time, with covariates, multiple runs